Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb1jzz1A.n75-108
Source: [PDB-id:chain] 1jzz:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.80 ANGSTROMS.
Position (80, 103), (84, 96)
Primary structure ('_': anchors) _CGA_-_UUUGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 10 &larr
4 4 11 →
5 11 12 ↑
6 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Watson-Crick/Watson-Crick cis y
3 3 11 O2'/Bifurcated ?
4 4 5 C/O2' ?
5 4 7 O2'/Watson-Crick ?
6 4 10 O2'/Bifurcated trans y
7 5 6 Watson-Crick/Watson-Crick cis
8 5 11 Watson-Crick/O2' ?
9 8 10 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters