Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb1jzz1A.n268-316
Source: [PDB-id:chain] 1jzz:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.80 ANGSTROMS.
Position (261, 325), (268, 316)
Primary structure ('_': anchors) _CCUCAA_-_GAACGAGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 7 11 →
4 9 10 ↑
5 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 13 Bifurcated/O2' ?
3 1 18 Watson-Crick/Watson-Crick cis
4 5 14 Watson-Crick/Watson-Crick cis
5 7 10 O2'/Bifurcated ?
6 8 9 Watson-Crick/Watson-Crick cis
7 17 18 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters