Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb1jzz1A.n171-178
Source: [PDB-id:chain] 1jzz:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.80 ANGSTROMS.
Position (165, 185), (171, 178)
Primary structure ('_': anchors) _GAACU_-_UCAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 14 →
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 7 9 →
8 8 9 ↑
9 9 10 ↑
10 10 11 &larr
11 11 13 →
12 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 14 Hoogsteen/Sugar trans
3 3 12 Bifurcated/O2' ?
4 3 13 Watson-Crick/Hoogsteen trans
5 5 10 Sugar/Hoogsteen trans y
6 6 9 Watson-Crick/Watson-Crick cis y
7 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters