Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb1jzz1A.e2301-2315
Source: [PDB-id:chain] 1jzz:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.80 ANGSTROMS.
Position (2301, 2315)
Primary structure ('_': anchors) _ACCGUGUGGAAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 15 →
4 4 5 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
9 11 12 ↑
10 12 13 ↑
11 13 14 ↑
12 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis y
2 3 14 Watson-Crick/Watson-Crick cis
3 5 11 O2'/Watson-Crick ?
4 5 12 Bifurcated/O2' trans
5 6 11 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters