Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'16-Hairpin pdb1jzz1A.e2250-2267
Source: [PDB-id:chain] 1jzz:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.80 ANGSTROMS.
Position (2250, 2267)
Primary structure ('_': anchors) _GAGACUGACACGUCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 17 →
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 7 8 ↑
8 9 10 ↑
9 10 11 ↑
10 11 12 ↑
11 12 13 ↑
12 13 14 ↑
13 15 16 ↑
14 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis y
2 2 17 Bifurcated/O2' ?
3 3 4 Hoogsteen/O2' ?
4 3 16 Sugar/Hoogsteen trans
5 4 15 Watson-Crick/Watson-Crick cis y
6 8 10 O2'/Sugar ?
7 8 11 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters