Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-2-Internal Loop pdb1jzyFA.n2408-2480
Source: [PDB-id:chain] 1jzy:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (2410, 2478), (2413, 2471)
Primary structure ('_': anchors) _ACGCGA_-_UC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 8
3 5 9
4 10 11
5 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 4 11 Watson-Crick/Watson-Crick cis y
3 5 10 Watson-Crick/Watson-Crick cis
4 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters