Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb1jzy1A.n806-893
Source: [PDB-id:chain] 1jzy:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.50 ANGSTROMS.
Position (812, 887), (821, 878)
Primary structure ('_': anchors) _GUUGACCA_-_CGCGUUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 7 8 ↑
3 8 9 ↑
4 9 10 ↑
5 9 13 →
6 11 12 ↑
7 12 13 ↑
8 13 14 ↑
9 14 15 ↑
10 17 18 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 3 4 Hoogsteen/O2' ?
4 5 18 O2'/Bifurcated cis y
5 6 16 Watson-Crick/Watson-Crick cis y
6 8 13 Watson-Crick/Watson-Crick cis
7 9 12 Watson-Crick/Bifurcated cis y
8 10 11 Watson-Crick/Watson-Crick cis
9 16 17 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters