Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb1jzy1A.i524-544
Source: [PDB-id:chain] 1jzy:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.50 ANGSTROMS.
Position (524, 544)
Primary structure ('_': anchors) _GUGCCUAUUGAAGCAUGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 ↑
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 10 11 ↑
7 12 16 ↑
8 13 14 ↑
9 16 17 ↑
10 17 18 ↑
11 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 14 O2'/Hoogsteen ?
2 4 19 Watson-Crick/Watson-Crick cis y
3 5 18 Watson-Crick/Watson-Crick cis
4 6 17 Watson-Crick/Watson-Crick cis y
5 7 16 Watson-Crick/Watson-Crick cis
6 9 11 O2'/Hoogsteen ?
7 9 12 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters