Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb1jzy1A.e2366-2384
Source: [PDB-id:chain] 1jzy:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.50 ANGSTROMS.
Position (2366, 2384)
Primary structure ('_': anchors) _CGAGAGUCCAUAUCGGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 4 17 →
5 5 6 ↑
6 6 7 ↑
7 7 10 &larr
8 8 9 ↑
9 9 10 ↑
10 13 14 ↑
11 14 15 ↑
12 15 16 ↑
13 17 18 ↑
14 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 4 11 Bifurcated/O2' ?
3 4 16 O2'/Bifurcated ?
4 5 15 Watson-Crick/Watson-Crick cis y
5 6 11 Bifurcated/Hoogsteen trans y
6 7 11 O2'/Bifurcated ?
7 7 13 Bifurcated/O2' trans y
8 9 10 Bifurcated/O2' ?
9 12 15 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters