Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1jzxFA.n821-878
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.10 ANGSTROMS.
Position (826, 873), (831, 867)
Primary structure ('_': anchors) _CCGAA_-_GUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 →
2 3 10 →
3 4 5 ↑
4 4 12 &larr
5 5 6 ↑
6 8 9 ↑
7 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis y
2 4 10 Sugar/Hoogsteen trans y
3 4 12 Watson-Crick/O2' ?
4 5 9 Watson-Crick/Watson-Crick cis
5 6 7 Hoogsteen/Sugar cis y
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters