Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb1jzxFA.n806-893
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.10 ANGSTROMS.
Position (812, 887), (821, 878)
Primary structure ('_': anchors) _CGCGUUUA_-_GUUGACCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 8 12 →
7 9 10 ↑
8 11 12 ↑
9 12 13 ↑
10 13 14 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis
2 3 16 O2'/Bifurcated cis y
3 4 5 Hoogsteen/O2' ?
4 5 15 Watson-Crick/Watson-Crick cis y
5 8 13 Watson-Crick/Watson-Crick cis
6 9 12 Watson-Crick/Bifurcated cis y
7 10 11 Watson-Crick/Watson-Crick cis
8 17 18 Hoogsteen/O2' ?
9 18 19 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters