Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1jzxFA.n2592-2618
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.10 ANGSTROMS.
Position (2586, 2624), (2592, 2618)
Primary structure ('_': anchors) _GGUAG_-_UCUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 5 6 ↑
4 6 7 ↑
5 8 9 ↑
6 12 13 ↑
7 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 12 Hoogsteen/Sugar trans y
3 4 12 O2'/Bifurcated ?
4 5 11 Bifurcated/O2' ?
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters