Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb1jzxFA.n212-239
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.10 ANGSTROMS.
Position (215, 236), (222, 230)
Primary structure ('_': anchors) _GAACC_-_UUAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 9 →
6 6 7 ↑
7 6 11 &larr
8 8 9 ↑
9 12 13 &larr
10 13 14 ↑
11 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 10 Watson-Crick/Watson-Crick trans y
3 4 12 O2'/Bifurcated ?
4 5 11 O2'/Bifurcated ?
5 6 11 Bifurcated/O2' ?
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters