Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-4-Internal Loop pdb1jzxFA.n1378-1534
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.10 ANGSTROMS.
Position (1380, 1532), (1385, 1522)
Primary structure ('_': anchors) _CAAGAAAAG_-_GGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 6 ↑
6 7 12 ↓
7 8 10 ↑
8 10 11 ↑
9 15 16 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 2 16 Watson-Crick/O2' ?
3 3 15 Hoogsteen/Sugar trans
4 4 14 O2'/Bifurcated ?
5 4 15 Bifurcated/O2' ?
6 5 14 O2'/Sugar ?
7 7 8 Hoogsteen/O2' ?
8 7 10 Watson-Crick/Watson-Crick cis
9 9 10 Hoogsteen/O2' ?
10 11 12 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters