Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1jzx1A.i960-983
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (960, 983)
Primary structure ('_': anchors) _UAAAUGAUCGCUCAGUGGUUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 5 7 ↑
3 7 8 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
7 11 12 ↑
8 15 17 ↑
9 17 18 ↑
10 22 23 ↑
11 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 14 15 Hoogsteen/O2' ?
2 16 17 Hoogsteen/Sugar cis
3 16 18 Hoogsteen/O2' ?
4 17 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters