Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb1jzx1A.i412-427
Source: [PDB-id:chain] 1jzx:A (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Source: Compound 23S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (412, 427)
Primary structure ('_': anchors) _GAUAGCGCAUAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 10 ↓
2 5 6 ↑
3 8 9 ↑
4 8 13 →
5 12 14 →
6 14 15 ↑
7 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Sugar/O2' ?
2 2 10 Bifurcated/O2' ?
3 3 5 Hoogsteen/O2' ?
4 5 10 Hoogsteen/Watson-Crick trans y
5 6 10 O2'/Bifurcated ?
6 7 10 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters