Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb1jox1A.e8-15
Source: [PDB-id:chain] 1jox:A (&rarr PDB)
Source: Information NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITH RESIDUAL DIPOLAR COUPLINGS
Source: Compound 5'-
Source: Resolution NOT APPLICABLE.
Position (8, 15)
Primary structure ('_': anchors) _UGAGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C3'-exo, 3: O4'-endo, 4: C2'-exo, 5: C4'-endo, 6: C3'-exo, 7: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 3 C/O2' ?
3 3 4 Sugar/O2' ?
4 3 7 Watson-Crick/O2' ?
5 3 8 Bifurcated/O2' ?
6 4 5 O2'/Hoogsteen ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters