Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1jj210.e1137-1147
Source: [PDB-id:chain] 1jj2:0 (&rarr PDB)
Source: Information FULLY REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Source: Compound 23S RRNA
Source: Resolution 2.40 ANGSTROMS.
Position (1137, 1147)
Primary structure ('_': anchors) _UUAGAAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C4'-exo, 6: C4'-exo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 5 6
5 6 10
6 8 9
7 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 O2'/Bifurcated ?
2 1 11 Watson-Crick/Watson-Crick cis
3 3 5 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters