Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1jgo1D.e51-59
Source: [PDB-id:chain] 1jgo:D (&rarr PDB)
Source: Information THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Source: Compound TRNA(PHE)
Source: Resolution 5.60 ANGSTROMS.
Position (51, 59)
Primary structure ('_': anchors) _UUCAAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 4 5
4 6 9
5 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 3 5 Hoogsteen/O2' ?
4 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters