Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb1jbs1C.e6-24
Source: [PDB-id:chain] 1jbs:C (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG
Source: Compound 29-MER SARCIN/RICIN DOMAIN RNA ANALOG
Source: Resolution 1.97 ANGSTROMS.
Position (6, 24)
Primary structure ('_': anchors) _UCAGUACGAUAGGAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C3'-exo, 10: C2'-endo, 11: C2'-endo, 12: C2'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 &larr
4 4 6 →
5 5 14 &larr
6 6 7 ↑
7 7 8 ↑
8 7 15 →
9 8 9 ↑
10 9 10 ↑
11 9 13 →
12 13 14 ↑
13 15 16 ↑
14 16 17 ↑
15 17 18 ↑
16 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 3 17 Bifurcated/O2' trans y
3 4 16 O2'/Bifurcated trans
4 5 6 Hoogsteen/Sugar cis y
5 6 14 Bifurcated/O2' ?
6 6 15 Hoogsteen/Watson-Crick trans
7 7 14 O2'/Bifurcated trans
8 8 13 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters