Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb1jbr1D.e7-25
Source: [PDB-id:chain] 1jbr:D (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE RIBOTOXIN RESTRICTOCIN AND A 31- MER SRD RNA INHIBITOR
Source: Compound 31-MER SRD RNA ANALOG
Source: Resolution 2.15 ANGSTROMS.
Position (7, 25)
Primary structure ('_': anchors) _UCAGUACGAGAGGAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C3'-exo, 10: C2'-endo, 11: C2'-endo, 12: O4'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 11: syn, 12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 &larr
4 4 6 →
5 5 14 &larr
6 7 8 ↑
7 7 15 →
8 9 10 ↑
9 9 13 →
10 13 14 ↑
11 15 16 ↑
12 16 17 ↑
13 17 18 ↑
14 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 3 17 Bifurcated/O2' trans y
3 4 16 Hoogsteen/Hoogsteen trans
4 5 15 O2'/Bifurcated ?
5 6 14 Watson-Crick/O2' ?
6 6 15 Hoogsteen/Watson-Crick trans
7 7 14 O2'/Bifurcated trans
8 8 13 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters