Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'11-Segment pdb1j5e1A.i692-704
Source: [PDB-id:chain] 1j5e:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.05 ANGSTROMS.
Position (692, 704)
Primary structure ('_': anchors) _GAACGCCGAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 6 7 ↑
6 7 8 ↑
7 8 9 &larr
8 10 12 →
9 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 8 Bifurcated/O2' ?
2 7 8 Bifurcated/O2' ?
3 10 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters