Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Segment pdb1j5e1A.i1470-1481
Source: [PDB-id:chain] 1j5e:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.05 ANGSTROMS.
Position (1470, 1481)
Primary structure ('_': anchors) _UAACAAGGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 6: C1'-exo, 8: O4'-endo, 9: C2'-exo, 10: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 5
4 5 8 &larr
5 6 8
6 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters