Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Segment pdb1ibk1A.i1212-1218
Source: [PDB-id:chain] 1ibk:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.31 ANGSTROMS.
Position (1212, 1218)
Primary structure ('_': anchors) _ACAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 7 O2'/Sugar cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters