Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb1i9f1A.n1-34
Source: [PDB-id:chain] 1i9f:A (&rarr PDB)
Source: Information STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE
Source: Compound REV RESPONSE ELEMENT RNA
Source: Resolution NOT APPLICABLE.
Position (6, 29), (9, 25)
Primary structure ('_': anchors) _GG_-_GUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C1'-exo, 2: C4'-exo, 3: C2'-endo, 4: C4'-exo, 6: C3'-exo, 7: C2'-endo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 5 6 &larr
3 6 8 →
4 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 9 Watson-Crick/Watson-Crick cis
3 2 8 Watson-Crick/Watson-Crick cis
4 3 6 Watson-Crick/Watson-Crick trans
5 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters