Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb1i97FA.n580-622
Source: [PDB-id:chain] 1i97:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 4.50 ANGSTROMS.
Position (585, 617), (594, 610)
Primary structure ('_': anchors) _GGGAGC_-_GUGAAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 17
2 2 3
3 3 4
4 5 6
5 5 15 &larr
6 7 8
7 10 11
8 11 12
9 12 13
10 13 14
11 16 17
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis y
2 3 16 Watson-Crick/Watson-Crick cis y
3 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters