Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb1i97FA.n370-381
Source: [PDB-id:chain] 1i97:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 4.50 ANGSTROMS.
Position (365, 384), (370, 381)
Primary structure ('_': anchors) _GA_-_CAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 5
3 6 7
4 7 8
5 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 O2'/Bifurcated ?
2 1 10 Watson-Crick/Watson-Crick cis
3 2 6 Watson-Crick/Watson-Crick cis y
4 2 9 Hoogsteen/Watson-Crick trans y
5 4 5 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters