Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1i971A.n572-631
Source: [PDB-id:chain] 1i97:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RRNA
Source: Resolution 4.50 ANGSTROMS.
Position (573, 630), (580, 622)
Primary structure ('_': anchors) _GGGGCG_-_UACGCUC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
10: C4'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 5 10 &larr
6 6 7
7 7 8
8 7 13
9 9 10
10 11 12
11 13 14
12 14 15
13 16 17
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 4 14 Watson-Crick/Watson-Crick cis
3 6 13 Watson-Crick/Bifurcated cis y
4 8 9 Watson-Crick/Watson-Crick cis y
5 10 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters