Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-3-Internal Loop pdb1i971A.n1028-1190
Source: [PDB-id:chain] 1i97:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RRNA
Source: Resolution 4.50 ANGSTROMS.
Position (1029, 1189), (1036, 1185)
Primary structure ('_': anchors) _UGCUGC_-_GGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 8 10
4 10 11
5 11 12
6 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 12 Watson-Crick/Watson-Crick cis y
3 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters