Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1i96FA.n1221-1276
Source: [PDB-id:chain] 1i96:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 4.20 ANGSTROMS.
Position (1227, 1270), (1233, 1264)
Primary structure ('_': anchors) _AAAAA_-_ACAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 13
2 2 3
3 3 4
4 4 11
5 8 9
6 9 10
7 10 11
8 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 12 Hoogsteen/Watson-Crick trans y
3 6 9 Watson-Crick/Watson-Crick cis y
4 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters