Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb1i94FA.n410-421
Source: [PDB-id:chain] 1i94:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 3.20 ANGSTROMS.
Position (403, 427), (410, 421)
Primary structure ('_': anchors) _GUAAA_-_GAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 8: C2'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 6 →
5 5 13 →
6 6 7 &larr
7 8 9 ↑
8 9 10 ↑
9 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 14 Bifurcated/O2' trans
3 3 14 O2'/Watson-Crick ?
4 6 10 Bifurcated/O2' ?
5 6 11 O2'/Bifurcated ?
6 7 8 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters