Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb1i941A.i842-857
Source: [PDB-id:chain] 1i94:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Source: Compound 16S RRNA
Source: Resolution 3.20 ANGSTROMS.
Position (842, 857)
Primary structure ('_': anchors) _GCGUUAAGCGCGCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 5: C4'-exo, 6: C4'-exo, 7: C4'-exo, 8: O4'-endo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 7 9
4 9 10
5 10 11
6 11 12
7 13 14
8 14 15
9 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 8 Bifurcated/O2' ?
2 4 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters