Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Hairpin pdb1i941A.e314-327
Source: [PDB-id:chain] 1i94:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Source: Compound 16S RRNA
Source: Resolution 3.20 ANGSTROMS.
Position (314, 327)
Primary structure ('_': anchors) _ACUGAGACACGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-exo, 8: C4'-exo, 9: C4'-exo, 10: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 6 7
6 8 10
7 10 13
8 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 9 O2'/Bifurcated ?
3 2 10 O2'/Bifurcated ?
4 2 13 Watson-Crick/Watson-Crick cis
5 3 10 Hoogsteen/Watson-Crick trans
6 4 8 Hoogsteen/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters