Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Hairpin pdb1i941A.e1336-1347
Source: [PDB-id:chain] 1i94:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Source: Compound 16S RRNA
Source: Resolution 3.20 ANGSTROMS.
Position (1336, 1347)
Primary structure ('_': anchors) _AUCAGCCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
3 6 7
4 9 11
5 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' ?
3 2 11 Watson-Crick/Watson-Crick cis
4 3 9 Watson-Crick/Watson-Crick trans
5 4 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters