Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1i3y1A.e7-13
Source: [PDB-id:chain] 1i3y:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA.
Source: Compound 5'-R(*GP*GP*CP*UP*GP*GP*CP*(OMU)
Source: Resolution NOT APPLICABLE.
Position (7, 13)
Primary structure ('_': anchors) _UGUUC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 5: C2'-endo, 6: C2'-endo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Watson-Crick cis
3 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters