Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb1hs41A.e3-10
Source: [PDB-id:chain] 1hs4:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA)
Source: Compound 5'-R(*GP*CP*GP*UP*UP*AP*AP*AP*UP*CP*GP*CP*A)-3'
Source: Resolution NOT APPLICABLE.
Position (3, 10)
Primary structure ('_': anchors) _UUAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 7 →
3 4 5 ↑
4 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 7 Watson-Crick/Watson-Crick cis
3 3 5 O2'/Hoogsteen ?
4 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters