Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Segment pdb1hr01A.i534-547
Source: [PDB-id:chain] 1hr0:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.20 ANGSTROMS.
Position (534, 547)
Primary structure ('_': anchors) _CGGAUUCACUGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 7: C2'-endo, 8: C2'-endo, 9: C4'-exo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 6 12
6 9 13
7 10 11
8 11 12 &larr
9 13 14
Tertiary structure: Base-pairs
(anchor pairs)
None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters