Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Segment pdb1hr01A.i350-360
Source: [PDB-id:chain] 1hr0:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.20 ANGSTROMS.
Position (350, 360)
Primary structure ('_': anchors) _AGGAAUCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C4'-exo, 8: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 6 Hoogsteen/O2' ?
2 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters