Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1hq11B.e24-29
Source: [PDB-id:chain] 1hq1:B (&rarr PDB)
Source: Information STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE
Source: Compound 4.5S RNA DOMAIN IV
Source: Resolution 1.52 ANGSTROMS.
Position (24, 29)
Primary structure ('_': anchors) _GAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 6
3 3 4
4 4 5
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 5 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters