Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1hnzFA.n143-158
Source: [PDB-id:chain] 1hnz:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (138, 164), (143, 158)
Primary structure ('_': anchors) _CUAAU_-_ACAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 3 4
3 5 6
4 6 7
5 9 10
6 11 12
7 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 12 Hoogsteen/Watson-Crick trans
3 4 11 Hoogsteen/Watson-Crick trans
4 5 10 Watson-Crick/Hoogsteen trans y
5 6 9 Watson-Crick/Hoogsteen trans
6 7 8 Watson-Crick/Watson-Crick cis
7 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters