Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-8-Internal Loop pdb1hnzFA.n1110-1120
Source: [PDB-id:chain] 1hnz:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (1101, 1128), (1110, 1120)
Primary structure ('_': anchors) _GGCACUC_-_GUUGCCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 12 →
6 7 8 ↑
7 8 9 ↑
8 10 11 ↑
9 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 2 18 Watson-Crick/Bifurcated cis y
3 4 15 Watson-Crick/O2' cis y
4 6 15 Watson-Crick/Watson-Crick cis
5 7 12 Sugar/Watson-Crick trans y
6 8 11 Watson-Crick/Watson-Crick cis y
7 8 14 Watson-Crick/Watson-Crick cis y
8 9 10 Watson-Crick/Watson-Crick cis
9 12 14 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters