Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1hnwFA.n1218-1273
Source: [PDB-id:chain] 1hnw:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.40 ANGSTROMS.
Position (1224, 1267), (1230, 1261)
Primary structure ('_': anchors) _AAAAA_-_ACAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C4'-exo, 11: C4'-exo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 13
2 2 3
3 3 4
4 4 11
5 6 7 &larr
6 8 9
7 9 10
8 10 11
9 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 12 Hoogsteen/Watson-Crick trans
3 6 9 Watson-Crick/Watson-Crick trans
4 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters