Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb1hnw1A.i839-854
Source: [PDB-id:chain] 1hnw:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (839, 854)
Primary structure ('_': anchors) _GCGUUAAGCGCGCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 6: C2'-endo, 7: C1'-exo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 7 9
4 9 10
5 10 11
6 11 12
7 13 14
8 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 8 Watson-Crick/O2' ?
2 7 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters