Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-Segment pdb1hc81C.i31-40
Source: [PDB-id:chain] 1hc8:C (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Source: Compound 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN
Source: Resolution 2.80 ANGSTROMS.
Position (31, 40)
Primary structure ('_': anchors) _UUAAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C2'-exo, 8: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 5 6 &larr
5 7 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Watson-Crick/Watson-Crick trans
2 3 5 Hoogsteen/O2' ?
3 3 6 O2'/Watson-Crick ?
4 9 10 Hoogsteen/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters