Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1gtr1B.e29-37
Source: [PDB-id:chain] 1gtr:B (&rarr PDB)
Source: Information STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE
Source: Compound RNA (74-MER)
Source: Resolution 2.50 ANGSTROMS.
Position (29, 37)
Primary structure ('_': anchors) _UUCUGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 4: C2'-endo, 5: C2'-endo, 6: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 7
4 7 8
5 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 3 7 Hoogsteen/Sugar trans y
4 5 7 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters