Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1gix1D.e12-22
Source: [PDB-id:chain] 1gix:D (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIX, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Source: Compound TRNA(PHE)
Source: Resolution 5.50 ANGSTROMS.
Position (12, 22)
Primary structure ('_': anchors) _AAGCGGUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo, 7: C2'-endo, 8: C2'-endo, 9: C2'-endo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 10 →
4 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters