Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-Hairpin pdb1gix1B.e13-22
Source: [PDB-id:chain] 1gix:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIX, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Source: Compound TRNA(PHE)
Source: Resolution 5.50 ANGSTROMS.
Position (13, 22)
Primary structure ('_': anchors) _AGUUGGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 4: C3'-exo, 5: C2'-endo, 6: C2'-endo, 7: C2'-endo, 8: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 8 9 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters