Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb1g70FA.n1-32
Source: [PDB-id:chain] 1g70:A (&rarr PDB)
Source: Information COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE
Source: Compound HIV-1 RRE-IIB 32 NUCLEOTIDE RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (6, 27), (9, 23)
Primary structure ('_': anchors) _GUA_-_GG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C4'-exo, 4: C2'-endo, 6: C4'-exo, 7: C4'-exo, 8: C2'-endo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 4 →
3 4 5 &larr
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis
3 4 5 O2'/Hoogsteen ?
4 4 7 Watson-Crick/Watson-Crick trans
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters