Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1foq1C.e47-53
Source: [PDB-id:chain] 1foq:C (&rarr PDB)
Source: Information PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
Source: Compound BACTERIOPHAGE PHI29 PROHEAD RNA
Source: Resolution 0.00 ANGSTROMS.
Position (47, 53)
Primary structure ('_': anchors) _UUAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 3 4 O2'/Watson-Crick ?
3 3 5 Hoogsteen/Watson-Crick trans y
4 4 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters