Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-7-Internal Loop pdb1fkaFA.n583-599
Source: [PDB-id:chain] 1fka:A (&rarr PDB)
Source: Information STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (575, 605), (583, 599)
Primary structure ('_': anchors) _GGGAG_-_UGAAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 14
3 3 4
4 4 5
5 5 6
6 6 7
7 8 9
8 9 10
9 10 11
10 11 12
11 12 13
12 14 15
13 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 6 9 Watson-Crick/Watson-Crick cis
3 7 8 Watson-Crick/Watson-Crick cis y
4 10 11 Hoogsteen/O2' ?
5 11 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters